ExperimentSetReplicate

ExperimentSet4DNESCCP4KTY
released
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HiC experiment done on Panc1

   May 5th, 2017 at 6:43pm

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
Panc1
Experiment Type(s) 
Dilution Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: HindIII

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESCCP4KTY
Multiple Experiments
File
Contact List-combined (pairs)
4DNFI1JBDZA8
194.35m
39.047%
24.457%
36.496%
Experiment
4DNEXOJ1T4FS
Bio Rep 1, Tec Rep 1
Dilution Hi-C on Panc1 with HindIII
File
Contact List-replicate (pairs)
4DNFIGC79U53
109.59m
40.307%
21.114%
38.579%
Experiment
4DNEXMRUA2TD
Bio Rep 2, Tec Rep 1
Dilution Hi-C on Panc1 with HindIII
File
Contact List-replicate (pairs)
4DNFI7EWKU92
84.76m
37.419%
28.779%
33.802%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESCCP4KTY
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIFD991IA
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXOJ1T4FS
Bio Rep 1, Tec Rep 1
Dilution Hi-C on Panc1 with HindIII
File
Alignments (bam)
4DNFIOD8VVQ3
151.1m
10.479%
7.892%
3.568%
5.535%
0.298%
Experiment
4DNEXMRUA2TD
Bio Rep 2, Tec Rep 1
Dilution Hi-C on Panc1 with HindIII
File
Alignments (bam)
4DNFIMUIJLLX
137.87m
12.948%
7.464%
12.137%
5.972%
0.263%