ExperimentSetReplicate

ExperimentSet4DNESCKXJNST
released
View JSON

DNA Paint on HFF Htert cells with 3 loci

   August 8th, 2018 at 1:34pm
Source Publication
Extensive Heterogeneity and Intrinsic Variation in Spatial Genome Organization.
Finn EH, Pegoraro G, et al., Cell 2019

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
HFF-hTERT
Experiment Type(s) 
DNA FISH
Modification Type 
None
Treatment Type 
None
Assay Details 
Target: Chromosomes, GRCh38:17:63767294-63927790 region, GRCh38:17:65509811-65678200 region, GRCh38:17:36387556-36574537 region
Channel
Path
 
ch00
Chromosomes targeted by DAPI
ch01
GRCh38:17:63767294-63927790 region targeted by Cy5-labeled BAC
ch02
GRCh38:17:65509811-65678200 region targeted by Alexa Fluor 568-labeled BAC
ch03
GRCh38:17:36387556-36574537 region targeted by Alexa Fluor 488-labeled BAC

4 Processed Files

Experiment
File
File Type
File Size
From Multiple Experiments
4DNESCKXJNST
Multiple Experiments
File
4DNFID78GRES
locus distances, submitter format (txt)
26.34 kB
Experiment
4DNEXJ4YZSHQ
Bio Rep 1, Tec Rep 1
DNA FISH on HFF-hTERT
File
4DNFIY7XONWX
loci distances (txt)
142.22 kB
Experiment
4DNEXEIYL24W
Bio Rep 1, Tec Rep 2
DNA FISH on HFF-hTERT
File
4DNFI6V4KGJD
loci distances (txt)
160.76 kB
Experiment
4DNEXKBAAOPP
Bio Rep 1, Tec Rep 3
DNA FISH on HFF-hTERT
File
4DNFI41V4ZDZ
loci distances (txt)
154.8 kB