ExperimentSetReplicate

ExperimentSet4DNESD3Q8OZ2
released
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Replicates of ATAC-seq on CRISPR/cas9-modified Patski cells (Inv-Dxz4 clone a)

   February 6th, 2018 at 9:58pm
Source Publication
Orientation-dependent Dxz4 contacts shape the 3D structure of the inactive X chromosome.
Bonora G, Deng X, et al., Nature communications 2018

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
immortalized cells
Sample 
Patski
Experiment Type(s) 
ATAC-seq
Modification Type 
Crispr
Treatment Type 
None
Assay Details 
None

4 Processed Files

Quality Metrics

Experiment
For File
Percent mitochondrial reads
Nonredundant Read Fraction (NRF)
PCR Bottleneck Coefficient (PBC)
Filtered & Deduped Reads
Report
Details
Experiment
4DNEXMHN1BNA
Bio Rep 1, Tec Rep 1
ATAC-seq on Patski
File
Read Positions (bed)
4DNFIHWQ1ETQ
64.2%
0.65
0.63
19.9m
Experiment
For File
Optimal Peaks
Rescue Ratio
Self Consistency Ratio
Fraction of Reads in Peaks
Report
Details
From Multiple Experiments
4DNESD3Q8OZ2
Multiple Experiments
File
Peaks (bigbed)
4DNFI6F2WZF6
102.43k
0.0
1.0
0.2