ExperimentSetReplicate

ExperimentSet4DNESD3Q8OZ2
released
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Replicates of ATAC-seq on CRISPR/cas9-modified Patski cells (Inv-Dxz4 clone a)

   February 6th, 2018 at 9:58pm
Source Publication
Orientation-dependent Dxz4 contacts shape the 3D structure of the inactive X chromosome.
Bonora G, Deng X, et al., Nature communications 2018

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
immortalized cells
Sample 
Patski
Experiment Type(s) 
ATAC-seq
Modification Type 
Crispr
Treatment Type 
None
Assay Details 
None

4 Processed Files

Quality Metrics

Experiment
For File
Percent mitochondrial reads
Nonredundant Read Fraction (NRF)
PCR Bottleneck Coefficient (PBC)
Filtered & Deduped Reads
Details
Experiment
4DNEXMHN1BNA
Bio Rep 1, Tec Rep 1
ATAC-seq on Patski
File
Read Positions (bed)
4DNFIHWQ1ETQ
64.2%
0.65
0.63
19.9m
Experiment
For File
Optimal Peaks
Rescue Ratio
Self Consistency Ratio
Fraction of Reads in Peaks
Details
From Multiple Experiments
4DNESD3Q8OZ2
Multiple Experiments
File
Peaks (bigbed)
4DNFI6F2WZF6
102.43k
0.0
1.0
0.2