ExperimentSetReplicate

ExperimentSet4DNESD7X1EDQ
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RNA FISH of Prdx2 and Slc25a37 intronic regions on 24h differentiated cells treated for 60min with 1000nM flavopiridol

   September 14th, 2018 at 4:59pm
Source Publication
Transcriptional Burst Initiation and Polymerase Pause Release Are Key Control Points of Transcriptional Regulation.
Bartman CR, Hamagami N, et al., Molecular cell 2018

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
stem cells
Sample 
G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
Experiment Type(s) 
RNA FISH
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Target: Chromosomes, GRCm38:8:84969622-84974811 mouse region, GRCm38:14:69241851-69285103 mouse region
Channel
Path
 
ch00
Chromosomes targeted by DAPI
ch01
GRCm38:8:84969622-84974811 mouse region targeted by Cy5-labeled custom oligos
ch02
GRCm38:14:69241851-69285103 mouse region targeted by Cy3-labeled custom oligos

10 Processed Files

Experiment
File
File Type
File Size
Experiment
4DNEX9S5KDR5
Bio Rep 1, Tec Rep 1
RNA FISH on G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
File
4DNFIYBVJ3OL
coordinates (csv)
671 Bytes
File
4DNFI24NCZ27
csv
8.05 kB
File
4DNFIQZBCFRU
coordinates (csv)
95 Bytes
File
4DNFIH6AF6T8
csv
6.76 kB
Experiment
4DNEXMV24RUP
Bio Rep 2, Tec Rep 1
RNA FISH on G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
File
4DNFISU6NZ22
coordinates (csv)
494 Bytes
File
4DNFIK4OI582
csv
7.03 kB
Experiment
4DNEXZDK4B18
Bio Rep 3, Tec Rep 1
RNA FISH on G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
File
4DNFI6SK7Y2K
coordinates (csv)
852 Bytes
File
4DNFIUECM9WD
csv
9.45 kB
File
4DNFI3AKWUZ3
coordinates (csv)
96 Bytes
File
4DNFIOAP3XF3
csv
7.85 kB