ExperimentSetReplicate

ExperimentSet4DNESDG4HNP9
released
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Replicates of ATAC-seq on RUES2 stem cells differentiated to cardiomyocytes

   January 5th, 2018 at 4:05pm
Source Publication
Dynamics of genome reorganization during human cardiogenesis reveal an RBM20-dependent splicing factory.
Bertero A, Fields PA, et al., Nature communications 2019

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
stem cells
Sample 
RUES2
Experiment Type(s) 
ATAC-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
None

5 Processed Files

Quality Metrics

Experiment
For File
Percent mitochondrial reads
Nonredundant Read Fraction (NRF)
PCR Bottleneck Coefficient (PBC)
Filtered & Deduped Reads
Report
Details
Experiment
4DNEXA7ALE6L
Bio Rep 1, Tec Rep 1
ATAC-seq on RUES2
File
Read Positions (bed)
4DNFIZYWOA3Y
34.64%
0.97
0.97
34.32m
Experiment
4DNEX3XJJPN6
Bio Rep 2, Tec Rep 1
ATAC-seq on RUES2
File
Read Positions (bed)
4DNFIZDSO341
37.64%
0.97
0.97
18.84m
Experiment
For File
Optimal Peaks
Rescue Ratio
Self Consistency Ratio
Fraction of Reads in Peaks
Report
Details
From Multiple Experiments
4DNESDG4HNP9
Multiple Experiments
File
Peaks (bigbed)
4DNFI2PAGF67
166.52k
1.1
1.5
0.18