ExperimentSetReplicate

ExperimentSet4DNESDTYC5Y4
released
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DNA Paint on HFF Htert cells with 3 loci

   August 17th, 2018 at 4:41pm
Source Publication
Extensive Heterogeneity and Intrinsic Variation in Spatial Genome Organization.
Finn EH, Pegoraro G, et al., Cell 2019

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
HFF-hTERT
Experiment Type(s) 
DNA FISH
Modification Type 
None
Treatment Type 
None
Assay Details 
Target: Chromosomes, GRCh38:1:248125293-248263553 region, GRCh38:1:61560943-61746906 region, GRCh38:1:12708719-12865743 region
Channel
Path
 
ch00
Chromosomes targeted by DAPI
ch01
GRCh38:1:248125293-248263553 region targeted by Cy5-labeled BAC
ch02
GRCh38:1:61560943-61746906 region targeted by Alexa Fluor 568-labeled BAC
ch03
GRCh38:1:12708719-12865743 region targeted by Alexa Fluor 488-labeled BAC

7 Processed Files

Experiment
File
File Type
File Size
From Multiple Experiments
4DNESDTYC5Y4
Multiple Experiments
File
4DNFID78GRES
locus distances, submitter format (txt)
26.34 kB
Experiment
4DNEXMD2VKYN
Bio Rep 1, Tec Rep 4
DNA FISH on HFF-hTERT
File
4DNFIQFJ868Z
loci distances (txt)
46.47 kB
Experiment
4DNEXIJH4KN3
Bio Rep 1, Tec Rep 5
DNA FISH on HFF-hTERT
File
4DNFI9NHFM6Z
loci distances (txt)
79.58 kB
Experiment
4DNEX8XV8HPB
Bio Rep 1, Tec Rep 6
DNA FISH on HFF-hTERT
File
4DNFIPLGQ2HI
loci distances (txt)
70.03 kB
Experiment
4DNEX3JEAYQE
Bio Rep 1, Tec Rep 1
DNA FISH on HFF-hTERT
File
4DNFIX4FA4A9
loci distances (txt)
67.61 kB
Experiment
4DNEXCXXZK4S
Bio Rep 1, Tec Rep 2
DNA FISH on HFF-hTERT
File
4DNFIFWEBB63
loci distances (txt)
90.84 kB
Experiment
4DNEXFHLZWOC
Bio Rep 1, Tec Rep 3
DNA FISH on HFF-hTERT
File
4DNFIMEEIA77
loci distances (txt)
71.29 kB