ExperimentSetReplicate

ExperimentSet4DNESE3ICNE1
released
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Dilution Hi-C experiment on HG00514

   April 28th, 2017 at 5:46pm
Source Publication
Common DNA sequence variation influences 3-dimensional conformation of the human genome.
Gorkin DU, Qiu Y, et al., Genome biology 2019

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
HG00514
Experiment Type(s) 
Dilution Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: HindIII

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESE3ICNE1
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIJGGRF79
331.47m
30.85%
34.317%
34.832%
Experiment
4DNEXYC25MK5
Bio Rep 1, Tec Rep 1
Dilution Hi-C on HG00514 with HindIII
File
Contact List-replicate (pairs)
4DNFIX4AIQHN
189.96m
27.042%
35.632%
37.326%
Experiment
4DNEX92ZDG46
Bio Rep 2, Tec Rep 1
Dilution Hi-C on HG00514 with HindIII
File
Contact List-replicate (pairs)
4DNFIFGHMCXK
141.5m
35.963%
32.552%
31.485%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESE3ICNE1
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIEWJXIW4
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXYC25MK5
Bio Rep 1, Tec Rep 1
Dilution Hi-C on HG00514 with HindIII
File
Alignments (bam)
4DNFIC1YYRMZ
293.28m
13.669%
8.329%
7.695%
5.536%
0.457%
Experiment
4DNEX92ZDG46
Bio Rep 2, Tec Rep 1
Dilution Hi-C on HG00514 with HindIII
File
Alignments (bam)
4DNFIMXDX3SE
193.15m
6.386%
9.017%
8.311%
3.024%
0.502%