ExperimentSetReplicate

ExperimentSet4DNESE3J2KEO
released
View JSON

DNA Paint on HFF Htert cells with 3 loci

   August 13th, 2018 at 3:50pm
Source Publication
Extensive Heterogeneity and Intrinsic Variation in Spatial Genome Organization.
Finn EH, Pegoraro G, et al., Cell 2019

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
HFF-hTERT
Experiment Type(s) 
DNA FISH
Modification Type 
None
Treatment Type 
None
Assay Details 
Target: Chromosomes, GRCh38:17:9734635-9900986 region, GRCh38:17:38743489-38939529 region, GRCh38:17:30088606-30263568 region
Channel
Path
 
ch00
Chromosomes targeted by DAPI
ch01
GRCh38:17:9734635-9900986 region targeted by Cy5-labeled BAC
ch02
GRCh38:17:38743489-38939529 region targeted by Alexa Fluor 568-labeled BAC
ch03
GRCh38:17:30088606-30263568 region targeted by Alexa Fluor 488-labeled BAC

4 Processed Files

Experiment
File
File Type
File Size
From Multiple Experiments
4DNESE3J2KEO
Multiple Experiments
File
4DNFID78GRES
locus distances, submitter format (txt)
26.34 kB
Experiment
4DNEXH1C81U7
Bio Rep 2, Tec Rep 1
DNA FISH on HFF-hTERT
File
4DNFIJL7TF7R
loci distances (txt)
112.88 kB
Experiment
4DNEXWE5NASP
Bio Rep 2, Tec Rep 2
DNA FISH on HFF-hTERT
File
4DNFIF7UHK1Q
loci distances (txt)
204.52 kB
Experiment
4DNEXEN5KMQC
Bio Rep 2, Tec Rep 3
DNA FISH on HFF-hTERT
File
4DNFIU4Z7GWX
loci distances (txt)
198.53 kB