ExperimentSetReplicate

ExperimentSet4DNESE8JB6XE
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RNA FISH of Cdc34 and Slc4a1 intronic regions in G1E-ER4 cells differentiated for 24 hours

   September 14th, 2018 at 4:59pm
Source Publication
Transcriptional Burst Initiation and Polymerase Pause Release Are Key Control Points of Transcriptional Regulation.
Bartman CR, Hamagami N, et al., Molecular cell 2018

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
stem cells
Sample 
G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
Experiment Type(s) 
RNA FISH
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Target: Chromosomes, GRCm38:10:79682195-79688398 mouse region, GRCm38:11:102348820-102365281 mouse region
Channel
Path
 
ch00
Chromosomes targeted by DAPI
ch01
GRCm38:10:79682195-79688398 mouse region targeted by Cy5-labeled custom oligos
ch02
GRCm38:11:102348820-102365281 mouse region targeted by Cy3-labeled custom oligos

12 Processed Files

Experiment
File
File Type
File Size
Experiment
4DNEXGY7NN1B
Bio Rep 1, Tec Rep 1
RNA FISH on G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
File
4DNFIJ9OFYME
csv
20.76 kB
File
4DNFIGUJHRIM
coordinates (csv)
4.96 kB
File
4DNFIYUGTL75
csv
36.41 kB
File
4DNFIO3GV8WJ
coordinates (csv)
11.61 kB
Experiment
4DNEXF6A9FIH
Bio Rep 2, Tec Rep 1
RNA FISH on G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
File
4DNFI1L1Q4HP
csv
17.01 kB
File
4DNFIS6GJJHA
coordinates (csv)
4.22 kB
File
4DNFIJ4HT69V
csv
21.15 kB
File
4DNFI6ECUOLE
coordinates (csv)
5.98 kB
Experiment
4DNEXU7AH8AJ
Bio Rep 3, Tec Rep 1
RNA FISH on G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
File
4DNFID22C7E1
csv
15.75 kB
File
4DNFIBJFVSC6
coordinates (csv)
3.51 kB
File
4DNFILBGWKLH
csv
27.49 kB
File
4DNFIDR58GJS
coordinates (csv)
8.88 kB