ExperimentSetReplicate

ExperimentSet4DNESEPDL6KY
released
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HiC from mature olfactory sensory neurons

   March 19th, 2018 at 8:04pm
Source Publication
LHX2- and LDB1-mediated trans interactions regulate olfactory receptor choice.
Monahan K, Horta A, et al., Nature 2019

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
primary cells
Sample 
olfactory receptor cell
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: DpnII

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESEPDL6KY
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIOWTBACC
557.7m
37.768%
25.729%
36.503%
Experiment
4DNEX5ICY4Q2
Bio Rep 1, Tec Rep 1
in situ Hi-C on olfactory receptor cell with DpnII
File
Contact List-replicate (pairs)
4DNFIVN95UEZ
281.55m
33.299%
34.338%
32.363%
Experiment
4DNEXVCPZOH3
Bio Rep 2, Tec Rep 1
in situ Hi-C on olfactory receptor cell with DpnII
File
Contact List-replicate (pairs)
4DNFI2HQA2EE
276.15m
42.324%
16.952%
40.724%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESEPDL6KY
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIUH9FJR6
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEX5ICY4Q2
Bio Rep 1, Tec Rep 1
in situ Hi-C on olfactory receptor cell with DpnII
File
Alignments (bam)
4DNFIMVGHWL1
491.38m
8.627%
20.05%
8.757%
5.269%
0.095%
Experiment
4DNEXVCPZOH3
Bio Rep 2, Tec Rep 1
in situ Hi-C on olfactory receptor cell with DpnII
File
Alignments (bam)
4DNFI3N66SRD
492.61m
13.362%
19.599%
4.537%
6.443%
0.094%