ExperimentSetReplicate

ExperimentSet4DNESEQNSXSD
released
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dilution Hi-C on DT40 cells in prometaphase (60m post G2-block, nocodazole treated)

   October 30th, 2018 at 2:37pm
Source Publication
A pathway for mitotic chromosome formation.
Gibcus JH, Samejima K, et al., Science (New York, N.Y.) 2018

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
G. gallus
Sample Type 
immortalized cells
Sample 
DT40 with random integration of X. laevis Cdk1, CDK1 disruption
Experiment Type(s) 
Dilution Hi-C
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Enzyme: HindIII

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESEQNSXSD
Multiple Experiments
File
Contact List-combined (pairs)
4DNFI1TM5GVZ
151.86m
46.022%
29.038%
24.94%
Experiment
4DNEX148ZP8O
Bio Rep 1, Tec Rep 1
Dilution Hi-C on DT40 with random integration of X. laevis Cdk1, CDK1 disruption with HindIII
File
Contact List-replicate (pairs)
4DNFIGRISDQJ
49.14m
69.227%
21.214%
9.559%
Experiment
4DNEX4JDZLHX
Bio Rep 2, Tec Rep 1
Dilution Hi-C on DT40 with random integration of X. laevis Cdk1, CDK1 disruption with HindIII
File
Contact List-replicate (pairs)
4DNFIJSRODV2
102.72m
34.921%
32.781%
32.299%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESEQNSXSD
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIWHQLZTL
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEX148ZP8O
Bio Rep 1, Tec Rep 1
Dilution Hi-C on DT40 with random integration of X. laevis Cdk1, CDK1 disruption with HindIII
File
Alignments (bam)
4DNFIQ7X5QDB
101.7m
21.827%
9.466%
20.387%
0.004%
0.282%
Experiment
4DNEX4JDZLHX
Bio Rep 2, Tec Rep 1
Dilution Hi-C on DT40 with random integration of X. laevis Cdk1, CDK1 disruption with HindIII
File
Alignments (bam)
4DNFI859EJHA
165.26m
13.61%
7.555%
11.355%
5.325%
0.509%