ExperimentSetReplicate

ExperimentSet4DNESFI64TG3
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in situ Hi-C on heat treated S2 cells with MboI

   October 11th, 2018 at 8:56pm
Source Publication
Chromatin conformation remains stable upon extensive transcriptional changes driven by heat shock.
Ray J, Munn PR, et al., Proceedings of the National Academy of Sciences of the United States of America 2019

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
D. melanogaster
Sample Type 
immortalized cells
Sample 
S2
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
Heat Shock
Assay Details 
Enzyme: MboI

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESFI64TG3
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIRCC7SFB
130.63m
49.036%
38.304%
12.661%
Experiment
4DNEXZEXDG8I
Bio Rep 1, Tec Rep 1
in situ Hi-C on S2 with MboI
File
Contact List-replicate (pairs)
4DNFITUPOL6I
66.06m
51.911%
32.824%
15.265%
Experiment
4DNEX943Z1OX
Bio Rep 2, Tec Rep 1
in situ Hi-C on S2 with MboI
File
Contact List-replicate (pairs)
4DNFI7FT7REY
64.57m
46.094%
43.91%
9.996%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESFI64TG3
Multiple Experiments
File
Contact Matrix (mcool)
4DNFI8DRD739
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXZEXDG8I
Bio Rep 1, Tec Rep 1
in situ Hi-C on S2 with MboI
File
Alignments (bam)
4DNFI9TX5L7J
156.07m
24.827%
31.285%
1.562%
0.0%
0.729%
Experiment
4DNEX943Z1OX
Bio Rep 2, Tec Rep 1
in situ Hi-C on S2 with MboI
File
Alignments (bam)
4DNFIW1BI565
151.4m
25.996%
29.809%
1.546%
0.0%
1.237%