ExperimentSetReplicate

ExperimentSet4DNESFT1GE12
released
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Micro-C on HeLa-S3 (G1 phase) with 1% Formaldehyde and 3mM EGS crosslinking

   June 27th, 2020 at 6:56pm
Source Publication
Systematic evaluation of chromosome conformation capture assays.
Akgol Oksuz B, Yang L, et al., Nature methods 2021

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
HeLa-S3
Experiment Type(s) 
Micro-C
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Enzyme: MNase

8 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESFT1GE12
Multiple Experiments
File
Contact List-combined (pairs)
4DNFICR6SQM2
233.41m
24.087%
65.341%
10.572%
Experiment
4DNEX3Q5WM53
Bio Rep 1, Tec Rep 1
Micro-C on HeLa-S3 with MNase
File
Contact List-replicate (pairs)
4DNFI88RHP79
233.41m
24.087%
65.341%
10.572%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESFT1GE12
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIVNLQCAL
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEX3Q5WM53
Bio Rep 1, Tec Rep 1
Micro-C on HeLa-S3 with MNase
File
Alignments (bam)
4DNFIURPLE4S
370.28m
4.126%
19.711%
13.121%
0.006%
0.059%