ExperimentSetReplicate

ExperimentSet4DNESGTHHJAC
released
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Replicates of in situ Dnase Hi-C on RUES2 stem cells differentiated to cardiomyocytes

   January 5th, 2018 at 4:05pm
Source Publication
Dynamics of genome reorganization during human cardiogenesis reveal an RBM20-dependent splicing factory.
Bertero A, Fields PA, et al., Nature communications 2019

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
stem cells
Sample 
RUES2
Experiment Type(s) 
DNase Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: DNaseI

7 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESGTHHJAC
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIC12SGRA
335.5m
17.688%
48.204%
34.108%
Experiment
4DNEXIIJKSEL
Bio Rep 1, Tec Rep 1
DNase Hi-C on RUES2 with DNaseI
File
Contact List-replicate (pairs)
4DNFIPZK844C
161.75m
17.987%
46.694%
35.319%
Experiment
4DNEXGBN93KT
Bio Rep 2, Tec Rep 1
DNase Hi-C on RUES2 with DNaseI
File
Contact List-replicate (pairs)
4DNFIO2FMSL3
173.74m
17.41%
49.609%
32.981%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESGTHHJAC
Multiple Experiments
File
Contact Matrix (mcool)
4DNFI522M5AD
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXIIJKSEL
Bio Rep 1, Tec Rep 1
DNase Hi-C on RUES2 with DNaseI
File
Alignments (bam)
4DNFIWG53IWZ
235.79m
9.329%
15.755%
1.957%
4.358%
0.421%
Experiment
4DNEXGBN93KT
Bio Rep 2, Tec Rep 1
DNase Hi-C on RUES2 with DNaseI
File
Alignments (bam)
4DNFIZBAW7P6
258.14m
9.375%
16.793%
2.597%
3.929%
0.425%