ExperimentSetReplicate

ExperimentSet4DNESGVZS4FT
released
View JSON

DNA Paint on HFF Htert cells with 3 loci

   August 8th, 2018 at 1:34pm
Source Publication
Extensive Heterogeneity and Intrinsic Variation in Spatial Genome Organization.
Finn EH, Pegoraro G, et al., Cell 2019

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
HFF-hTERT
Experiment Type(s) 
DNA FISH
Modification Type 
None
Treatment Type 
None
Assay Details 
Target: Chromosomes, GRCh38:1:97025755-97207860 region, GRCh38:1:89759075-89913486 region, GRCh38:1:96067992-96226766 region
Channel
Path
 
ch00
Chromosomes targeted by DAPI
ch01
GRCh38:1:97025755-97207860 region targeted by Cy5-labeled BAC
ch02
GRCh38:1:89759075-89913486 region targeted by Alexa Fluor 568-labeled BAC
ch03
GRCh38:1:96067992-96226766 region targeted by Alexa Fluor 488-labeled BAC

3 Processed Files

Experiment
File
File Type
File Size
From Multiple Experiments
4DNESGVZS4FT
Multiple Experiments
File
4DNFID78GRES
locus distances, submitter format (txt)
26.34 kB
Experiment
4DNEX27MSTY4
Bio Rep 1, Tec Rep 1
DNA FISH on HFF-hTERT
File
4DNFI3OBZTVL
loci distances (txt)
156.17 kB
Experiment
4DNEXNBJV6U9
Bio Rep 1, Tec Rep 2
DNA FISH on HFF-hTERT
File
4DNFIJUYKUK2
loci distances (txt)
146.28 kB
Experiment
File
File Type
File Size
Experiment
4DNEXM2YYN2I
Bio Rep 1, Tec Rep 1
DNA FISH on HFF-hTERT
-
-
-