ExperimentSetReplicate

ExperimentSet4DNESGXQ19WQ
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RNA FISH of Hbaa1, Prdx2 and Klf1 intronic regions in G1E-ER4 cells differentiated for 24 hours

   September 14th, 2018 at 4:59pm
Source Publication
Transcriptional Burst Initiation and Polymerase Pause Release Are Key Control Points of Transcriptional Regulation.
Bartman CR, Hamagami N, et al., Molecular cell 2018

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
stem cells
Sample 
G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
Experiment Type(s) 
RNA FISH
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Target: Chromosomes, GRCm38:11:32283672-32284486 mouse region, GRCm38:8:84969622-84974811 mouse region, GRCm38:8:84901928-84905295 mouse region
Channel
Path
 
ch00
Chromosomes targeted by DAPI
ch01
GRCm38:11:32283672-32284486 mouse region targeted by Alexa Fluor 594-labeled custom oligos
ch02
GRCm38:8:84969622-84974811 mouse region targeted by Cy5-labeled custom oligos
ch03
GRCm38:8:84901928-84905295 mouse region targeted by Cy3-labeled custom oligos

6 Processed Files

Experiment
File
File Type
File Size
Experiment
4DNEXR3KBLEF
Bio Rep 1, Tec Rep 1
RNA FISH on G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
File
4DNFILRKWL1E
csv
31.4 kB
File
4DNFI94H155C
coordinates (csv)
9.59 kB
File
4DNFI97ZNU2Q
csv
30.05 kB
File
4DNFIAST11HU
coordinates (csv)
8.04 kB
File
4DNFI2MKC4IL
csv
28.57 kB
File
4DNFIBK17AUE
coordinates (csv)
6.69 kB