ExperimentSetReplicate

ExperimentSet4DNESHGL976U
released
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Dilution Hi-C experiment on GM19240

   April 28th, 2017 at 5:46pm
Source Publication
Common DNA sequence variation influences 3-dimensional conformation of the human genome.
Gorkin DU, Qiu Y, et al., Genome biology 2019

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
GM19240
Experiment Type(s) 
Dilution Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: HindIII

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESHGL976U
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIIQ5YL7C
608.64m
42.685%
27.654%
29.662%
Experiment
4DNEXR37V4FC
Bio Rep 1, Tec Rep 1
Dilution Hi-C on GM19240 with HindIII
File
Contact List-replicate (pairs)
4DNFIJHG5AA8
268.91m
46.331%
29.05%
24.619%
Experiment
4DNEXIFHB9PJ
Bio Rep 2, Tec Rep 1
Dilution Hi-C on GM19240 with HindIII
File
Contact List-replicate (pairs)
4DNFIDUCCV8B
339.73m
39.798%
26.549%
33.653%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESHGL976U
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIM8KVPS6
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXR37V4FC
Bio Rep 1, Tec Rep 1
Dilution Hi-C on GM19240 with HindIII
File
Alignments (bam)
4DNFIS78KVKD
510.98m
17.757%
8.064%
17.937%
3.616%
0.398%
Experiment
4DNEXIFHB9PJ
Bio Rep 2, Tec Rep 1
Dilution Hi-C on GM19240 with HindIII
File
Alignments (bam)
4DNFIYCYVXAH
557.42m
20.022%
8.322%
7.066%
3.641%
0.43%