ExperimentSetReplicate

ExperimentSet4DNESHSMN153
released
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DNA Paint on HFF Htert cells with 3 loci

   August 3rd, 2018 at 2:16pm
Source Publication
Extensive Heterogeneity and Intrinsic Variation in Spatial Genome Organization.
Finn EH, Pegoraro G, et al., Cell 2019

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
HFF-hTERT
Experiment Type(s) 
DNA FISH
Modification Type 
None
Treatment Type 
None
Assay Details 
Target: Chromosomes, GRCh38:4:152712784-152899106 region, GRCh38:4:151542617-151679223 region, GRCh38:4:153567330-153719454 region
Channel
Path
 
ch00
Chromosomes targeted by DAPI
ch01
GRCh38:4:152712784-152899106 region targeted by Alexa Fluor 568-labeled BAC
ch02
GRCh38:4:151542617-151679223 region targeted by Alexa Fluor 488-labeled BAC
ch03
GRCh38:4:153567330-153719454 region targeted by Cy5-labeled BAC

4 Processed Files

Experiment
File
File Type
File Size
From Multiple Experiments
4DNESHSMN153
Multiple Experiments
File
4DNFID78GRES
locus distances, submitter format (txt)
26.34 kB
Experiment
4DNEXV8HE9L6
Bio Rep 1, Tec Rep 1
DNA FISH on HFF-hTERT
File
4DNFI6TFB754
loci distances (txt)
63.63 kB
Experiment
4DNEXRDWUQGK
Bio Rep 1, Tec Rep 2
DNA FISH on HFF-hTERT
File
4DNFIQEWPLZR
loci distances (txt)
48.36 kB
Experiment
4DNEXBF2JNAN
Bio Rep 1, Tec Rep 3
DNA FISH on HFF-hTERT
File
4DNFIN8QFUFS
loci distances (txt)
46.79 kB