ExperimentSetReplicate

ExperimentSet4DNESHTTKZYB
released
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CTCC experiments with in vitro crosslinking with MboI digestion on GM12878 cells

   January 25th, 2022 at 4:56pm
Source Publication
Cryomilling Tethered Chromatin Conformation Capture reveal new insights into inter-chromosomal interactions
Xu J, Kumar S, et al., bioRxiv 2022

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
GM12878 (Tier 1)
Experiment Type(s) 
TCC
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: MboI

5 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESHTTKZYB
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIADN2P5E
11.29m
39.516%
31.429%
29.055%
Experiment
4DNEX9BBS4IQ
Bio Rep 1, Tec Rep 1
TCC on GM12878 (Tier 1) with MboI
File
Contact List-replicate (pairs)
4DNFIDZ1HYRK
11.29m
39.516%
31.429%
29.055%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESHTTKZYB
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIMOPXR2I
1000
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEX9BBS4IQ
Bio Rep 1, Tec Rep 1
TCC on GM12878 (Tier 1) with MboI
File
Alignments (bam)
4DNFICMT6K67
19.38m
15.799%
9.082%
6.562%
10.276%
0.682%