ExperimentSetReplicate

ExperimentSet4DNESI2UKI7P
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Dilution Hi-C experiment on HG00732

   April 28th, 2017 at 5:46pm
Source Publication
Common DNA sequence variation influences 3-dimensional conformation of the human genome.
Gorkin DU, Qiu Y, et al., Genome biology 2019

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
HG00732
Experiment Type(s) 
Dilution Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: HindIII

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESI2UKI7P
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIPJGCH5R
381.71m
28.549%
32.599%
38.853%
Experiment
4DNEXWV8J47A
Bio Rep 1, Tec Rep 1
Dilution Hi-C on HG00732 with HindIII
File
Contact List-replicate (pairs)
4DNFIOSJRQD7
224.8m
26.171%
33.514%
40.315%
Experiment
4DNEX8EKK377
Bio Rep 2, Tec Rep 1
Dilution Hi-C on HG00732 with HindIII
File
Contact List-replicate (pairs)
4DNFIV74X7T4
156.91m
31.955%
31.288%
36.757%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESI2UKI7P
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIFXDDDJ6
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXWV8J47A
Bio Rep 1, Tec Rep 1
Dilution Hi-C on HG00732 with HindIII
File
Alignments (bam)
4DNFIYTGQIEA
332.45m
13.003%
8.655%
6.062%
4.661%
0.437%
Experiment
4DNEX8EKK377
Bio Rep 2, Tec Rep 1
Dilution Hi-C on HG00732 with HindIII
File
Alignments (bam)
4DNFIKW4I9WC
208.08m
6.774%
9.281%
5.213%
3.326%
0.554%