ExperimentSetReplicate

ExperimentSet4DNESIG4ELE4
released
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HiC experiment done on Caki2

   May 5th, 2017 at 6:44pm

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
Caki2
Experiment Type(s) 
Dilution Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: HindIII

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESIG4ELE4
Multiple Experiments
File
Contact List-combined (pairs)
4DNFI32BAWJ2
205.96m
34.047%
28.402%
37.551%
Experiment
4DNEX4U1R4HK
Bio Rep 1, Tec Rep 1
Dilution Hi-C on Caki2 with HindIII
File
Contact List-replicate (pairs)
4DNFIQMLUCDP
108.24m
35.436%
28.992%
35.572%
Experiment
4DNEXQ2XU5ZX
Bio Rep 2, Tec Rep 1
Dilution Hi-C on Caki2 with HindIII
File
Contact List-replicate (pairs)
4DNFIO9FYBN9
97.71m
32.508%
27.749%
39.744%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESIG4ELE4
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIIH3SM5N
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEX4U1R4HK
Bio Rep 1, Tec Rep 1
Dilution Hi-C on Caki2 with HindIII
File
Alignments (bam)
4DNFIGYPWT6R
162.21m
12.456%
7.543%
7.719%
5.553%
0.309%
Experiment
4DNEXQ2XU5ZX
Bio Rep 2, Tec Rep 1
Dilution Hi-C on Caki2 with HindIII
File
Alignments (bam)
4DNFILQ5IAAR
161.52m
14.046%
14.417%
11.038%
0.001%
0.26%