ExperimentSetReplicate

ExperimentSet4DNESIQ6IPCO
released
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Replicates of in situ Dnase Hi-C on WTC11 human induced pluripotent stem cells differentiated to cardiomyocytes

   November 18th, 2018 at 6:54pm
Source Publication
Dynamics of genome reorganization during human cardiogenesis reveal an RBM20-dependent splicing factory.
Bertero A, Fields PA, et al., Nature communications 2019

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
induced pluripotent stem cells
Sample 
WTC-11 (Tier 1)
Experiment Type(s) 
DNase Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: DNaseI

7 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESIQ6IPCO
Multiple Experiments
File
Contact List-combined (pairs)
4DNFI3A9L1M2
205.92m
26.104%
38.521%
35.376%
Experiment
4DNEXXARC33I
Bio Rep 1, Tec Rep 1
DNase Hi-C on WTC-11 (Tier 1) with DNaseI
File
Contact List-replicate (pairs)
4DNFI78RAXOO
79.39m
22.139%
41.753%
36.108%
Experiment
4DNEXQ83RPBN
Bio Rep 2, Tec Rep 1
DNase Hi-C on WTC-11 (Tier 1) with DNaseI
File
Contact List-replicate (pairs)
4DNFIURGNLT4
126.52m
28.591%
36.492%
34.916%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESIQ6IPCO
Multiple Experiments
File
Contact Matrix (mcool)
4DNFI4KIXD4W
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXXARC33I
Bio Rep 1, Tec Rep 1
DNase Hi-C on WTC-11 (Tier 1) with DNaseI
File
Alignments (bam)
4DNFIE4KLGVT
147.67m
19.565%
15.745%
7.497%
3.43%
0.258%
Experiment
4DNEXQ83RPBN
Bio Rep 2, Tec Rep 1
DNase Hi-C on WTC-11 (Tier 1) with DNaseI
File
Alignments (bam)
4DNFI2P39HL4
211.9m
12.515%
16.995%
7.099%
3.684%
0.27%