ExperimentSetReplicate

ExperimentSet4DNESIWJ86NK
released
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Dilution Hi-C on rod photoreceptor cells from mice

   September 26th, 2019 at 6:43pm
Source Publication
Heterochromatin drives compartmentalization of inverted and conventional nuclei.
Falk M, Feodorova Y, et al., Nature 2019

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
tissue
Sample 
retinal rod cell
Experiment Type(s) 
Dilution Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: HindIII

8 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESIWJ86NK
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIBHNVERD
59.53m
20.082%
23.637%
56.281%
Experiment
4DNEXH1QMVLE
Bio Rep 1, Tec Rep 1
Dilution Hi-C on retinal rod cell with HindIII
File
Contact List-replicate (pairs)
4DNFIYUJO9HS
34.79m
18.886%
23.017%
58.096%
Experiment
4DNEXKR3CPL8
Bio Rep 2, Tec Rep 1
Dilution Hi-C on retinal rod cell with HindIII
File
Contact List-replicate (pairs)
4DNFIQ2TD7WL
24.74m
21.764%
24.508%
53.728%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESIWJ86NK
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIAUG25QU
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXH1QMVLE
Bio Rep 1, Tec Rep 1
Dilution Hi-C on retinal rod cell with HindIII
File
Alignments (bam)
4DNFIO4I3JMX
168.09m
16.81%
18.887%
43.599%
0.005%
0.024%
Experiment
4DNEXKR3CPL8
Bio Rep 2, Tec Rep 1
Dilution Hi-C on retinal rod cell with HindIII
File
Alignments (bam)
4DNFIYO2HKRW
182.24m
23.747%
17.601%
45.067%
0.008%
0.017%