ExperimentSetReplicate

ExperimentSet4DNESIZMF58U
released
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TCC on NIPBL KO hepatocytes

   May 10th, 2018 at 6:37pm
Source Publication
Two independent modes of chromatin organization revealed by cohesin removal.
Schwarzer W, Abdennur N, et al., Nature 2017

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
primary cells
Sample 
hepatocyte
Experiment Type(s) 
TCC
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Enzyme: HindIII

7 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESIZMF58U
Multiple Experiments
File
Contact List-combined (pairs)
4DNFI3FKXTEO
132.28m
44.702%
32.893%
22.405%
Experiment
4DNEXQAO3GNK
Bio Rep 1, Tec Rep 1
TCC on hepatocyte with HindIII
File
Contact List-replicate (pairs)
4DNFIMU8WWI7
62.49m
43.689%
34.047%
22.264%
Experiment
4DNEXACCWMEN
Bio Rep 2, Tec Rep 1
TCC on hepatocyte with HindIII
File
Contact List-replicate (pairs)
4DNFI91FZ151
69.79m
45.609%
31.859%
22.532%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESIZMF58U
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIS1NI99O
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXQAO3GNK
Bio Rep 1, Tec Rep 1
TCC on hepatocyte with HindIII
File
Alignments (bam)
4DNFIPGALI1I
131.41m
21.412%
19.542%
10.635%
0.856%
0.09%
Experiment
4DNEXACCWMEN
Bio Rep 2, Tec Rep 1
TCC on hepatocyte with HindIII
File
Alignments (bam)
4DNFIAYVKC2H
133.91m
22.468%
17.093%
7.555%
0.772%
0.088%