ExperimentSetReplicate

ExperimentSet4DNESJ1VX52C
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Dilution Hi-C experiment on HG00731

   April 28th, 2017 at 5:46pm
Source Publication
Common DNA sequence variation influences 3-dimensional conformation of the human genome.
Gorkin DU, Qiu Y, et al., Genome biology 2019

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
HG00731
Experiment Type(s) 
Dilution Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: HindIII

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESJ1VX52C
Multiple Experiments
File
Contact List-combined (pairs)
4DNFI7RUGED8
319.74m
32.128%
26.349%
41.522%
Experiment
4DNEXGU61TBP
Bio Rep 1, Tec Rep 1
Dilution Hi-C on HG00731 with HindIII
File
Contact List-replicate (pairs)
4DNFIGQBMKEG
176.5m
29.771%
27.625%
42.604%
Experiment
4DNEXIENJVWW
Bio Rep 2, Tec Rep 1
Dilution Hi-C on HG00731 with HindIII
File
Contact List-replicate (pairs)
4DNFI6GC9T2Y
143.23m
35.033%
24.777%
40.19%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESJ1VX52C
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIUZJP1ED
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXGU61TBP
Bio Rep 1, Tec Rep 1
Dilution Hi-C on HG00731 with HindIII
File
Alignments (bam)
4DNFIKL3DXUM
266.7m
13.764%
8.646%
6.067%
5.343%
0.442%
Experiment
4DNEXIENJVWW
Bio Rep 2, Tec Rep 1
Dilution Hi-C on HG00731 with HindIII
File
Alignments (bam)
4DNFIU45YGAV
197.2m
7.055%
9.516%
7.234%
3.562%
0.624%