ExperimentSetReplicate

ExperimentSet4DNESJEPWXEM
released
View JSON

DNA Paint on HFF Htert cells with 3 loci

   August 16th, 2018 at 4:44pm
Source Publication
Extensive Heterogeneity and Intrinsic Variation in Spatial Genome Organization.
Finn EH, Pegoraro G, et al., Cell 2019

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
HFF-hTERT
Experiment Type(s) 
DNA FISH
Modification Type 
None
Treatment Type 
None
Assay Details 
Target: Chromosomes, GRCh38:1:93528777-93687930 region, GRCh38:1:88222722-88418471 region, GRCh38:1:105256970-105427280 region
Channel
Path
 
ch00
Chromosomes targeted by DAPI
ch01
GRCh38:1:93528777-93687930 region targeted by Cy5-labeled BAC
ch02
GRCh38:1:88222722-88418471 region targeted by Alexa Fluor 568-labeled BAC
ch03
GRCh38:1:105256970-105427280 region targeted by Alexa Fluor 488-labeled BAC

4 Processed Files

Experiment
File
File Type
File Size
From Multiple Experiments
4DNESJEPWXEM
Multiple Experiments
File
4DNFID78GRES
locus distances, submitter format (txt)
26.34 kB
Experiment
4DNEXQYAAEAL
Bio Rep 1, Tec Rep 1
DNA FISH on HFF-hTERT
File
4DNFI4DCEGXT
loci distances (txt)
47.37 kB
Experiment
4DNEXYHZ8XJL
Bio Rep 1, Tec Rep 2
DNA FISH on HFF-hTERT
File
4DNFIOND4V8S
loci distances (txt)
69.95 kB
Experiment
4DNEXIVV1KVI
Bio Rep 1, Tec Rep 3
DNA FISH on HFF-hTERT
File
4DNFI9OE8XCJ
loci distances (txt)
57.06 kB