ExperimentSetReplicate

ExperimentSet4DNESJIYRA44
released
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Dilution Hi-C experiment on HG00513

   April 28th, 2017 at 5:46pm
Source Publication
Common DNA sequence variation influences 3-dimensional conformation of the human genome.
Gorkin DU, Qiu Y, et al., Genome biology 2019

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
HG00513
Experiment Type(s) 
Dilution Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: HindIII

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESJIYRA44
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIWMYVPYD
352.17m
35.189%
20.794%
44.017%
Experiment
4DNEXDQCMLIW
Bio Rep 1, Tec Rep 1
Dilution Hi-C on HG00513 with HindIII
File
Contact List-replicate (pairs)
4DNFITBTZVSY
201.96m
30.663%
21.536%
47.8%
Experiment
4DNEX7SP2DCT
Bio Rep 2, Tec Rep 1
Dilution Hi-C on HG00513 with HindIII
File
Contact List-replicate (pairs)
4DNFIT7H8HNZ
150.21m
41.274%
19.796%
38.93%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESJIYRA44
Multiple Experiments
File
Contact Matrix (mcool)
4DNFI66KARTU
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXDQCMLIW
Bio Rep 1, Tec Rep 1
Dilution Hi-C on HG00513 with HindIII
File
Alignments (bam)
4DNFIDQEXL2R
314.31m
14.465%
8.179%
6.443%
6.66%
0.506%
Experiment
4DNEX7SP2DCT
Bio Rep 2, Tec Rep 1
Dilution Hi-C on HG00513 with HindIII
File
Alignments (bam)
4DNFILVR6QA7
204.85m
7.5%
8.991%
6.755%
3.426%
0.554%