ExperimentSetReplicate

ExperimentSet4DNESK3JJMG3
released
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HiC experiment done on endometrial microvascular endothelial cells (HEMEC)

   October 4th, 2018 at 7:42pm

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
primary cells
Sample 
endometrial microvascular endothelial cells
Experiment Type(s) 
Dilution Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: HindIII

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESK3JJMG3
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIOQ6KYMN
239.97m
33.646%
44.761%
21.593%
Experiment
4DNEXNJT9NGH
Bio Rep 2, Tec Rep 1
Dilution Hi-C on endometrial microvascular endothelial cells with HindIII
File
Contact List-replicate (pairs)
4DNFI4K87ZXW
137.38m
48.445%
19.609%
31.946%
Experiment
4DNEXF3NH2EN
Bio Rep 1, Tec Rep 1
Dilution Hi-C on endometrial microvascular endothelial cells with HindIII
File
Contact List-replicate (pairs)
4DNFI5Y9LO42
102.59m
13.829%
78.441%
7.73%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESK3JJMG3
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIU3K3ORP
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXNJT9NGH
Bio Rep 2, Tec Rep 1
Dilution Hi-C on endometrial microvascular endothelial cells with HindIII
File
Alignments (bam)
4DNFI2E5TUHY
224.24m
21.271%
13.228%
4.238%
0.001%
0.111%
Experiment
4DNEXF3NH2EN
Bio Rep 1, Tec Rep 1
Dilution Hi-C on endometrial microvascular endothelial cells with HindIII
File
Alignments (bam)
4DNFIXSVRIPU
152.83m
17.375%
12.785%
2.715%
0.001%
0.126%