ExperimentSetReplicate

ExperimentSet4DNESKJERU1C
released
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HiC experiment done on ACHN.

   October 4th, 2018 at 7:42pm

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
primary cells
Sample 
ACHN
Experiment Type(s) 
Dilution Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: HindIII

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESKJERU1C
Multiple Experiments
File
Contact List-combined (pairs)
4DNFICIK4Y8I
187.14m
42.103%
32.561%
25.335%
Experiment
4DNEX85Y28QC
Bio Rep 1, Tec Rep 1
Dilution Hi-C on ACHN with HindIII
File
Contact List-replicate (pairs)
4DNFIDIOB1IS
73.27m
47.349%
29.224%
23.427%
Experiment
4DNEX1HJ66AS
Bio Rep 1, Tec Rep 1
Dilution Hi-C on ACHN with HindIII
File
Contact List-replicate (pairs)
4DNFILEWWANZ
113.87m
38.728%
34.709%
26.563%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESKJERU1C
Multiple Experiments
File
Contact Matrix (mcool)
4DNFI2DQTKBA
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEX85Y28QC
Bio Rep 1, Tec Rep 1
Dilution Hi-C on ACHN with HindIII
File
Alignments (bam)
4DNFI1TD4X6V
134.36m
33.515%
11.096%
0.855%
0.001%
0.125%
Experiment
4DNEX1HJ66AS
Bio Rep 1, Tec Rep 1
Dilution Hi-C on ACHN with HindIII
File
Alignments (bam)
4DNFIAXPJ49T
184.23m
24.105%
12.659%
1.428%
0.001%
0.146%