ExperimentSetReplicate

ExperimentSet4DNESL3AW546
released
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2 biological replicates of Hi-C on G1E-ER4 cells in early G1 phase

   March 3rd, 2020 at 8:07pm
Source Publication
Chromatin structure dynamics during the mitosis-to-G1 phase transition.
Zhang H, Emerson DJ, et al., Nature 2019

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
stem cells
Sample 
G1E-ER4 with mCherry-MD
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Enzyme: DpnII

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESL3AW546
Multiple Experiments
File
Contact List-combined (pairs)
4DNFI17PCA92
449.26m
56.737%
34.312%
8.95%
Experiment
4DNEXLH4W6O1
Bio Rep 1, Tec Rep 1
in situ Hi-C on G1E-ER4 with mCherry-MD with DpnII
File
Contact List-replicate (pairs)
4DNFIB8E78ER
247.26m
52.353%
39.256%
8.391%
Experiment
4DNEXXGCEQWT
Bio Rep 2, Tec Rep 1
in situ Hi-C on G1E-ER4 with mCherry-MD with DpnII
File
Contact List-replicate (pairs)
4DNFITKBCMEV
202m
62.103%
28.261%
9.635%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESL3AW546
Multiple Experiments
File
Contact Matrix (mcool)
4DNFI9ZY354E
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXLH4W6O1
Bio Rep 1, Tec Rep 1
in situ Hi-C on G1E-ER4 with mCherry-MD with DpnII
File
Alignments (bam)
4DNFI3NBFV8X
401.47m
11.562%
19.024%
3.011%
4.813%
0.086%
Experiment
4DNEXXGCEQWT
Bio Rep 2, Tec Rep 1
in situ Hi-C on G1E-ER4 with mCherry-MD with DpnII
File
Alignments (bam)
4DNFIFP4NWS8
322.07m
10.976%
19.031%
2.063%
5.212%
0.104%