ExperimentSetReplicate

ExperimentSet4DNESLMCRW2C
released
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H1-ESC ATAC-Seq biological replicates.

   October 10th, 2017 at 7:55pm

Data Usage Guidelines  

Data Use Guidelines: This is a data set generated by the 4DN Network and made freely available to the scientific community. If you are intending to use these data for a publication, we ask that you please contact the data generating lab to discuss possible coordinated publication. In your manuscript, please cite the 4DN White Paper (doi:10.1038/nature23884) and the 4DN Data Portal paper (doi:10.1038/s41467-022-29697-4), and please acknowledge the 4DN lab which generated the data. Please direct any questions to the Data Coordination and Integration Center.

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
stem cells
Sample 
H1-hESC (Tier 1)
Experiment Type(s) 
ATAC-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
None

5 Processed Files

Quality Metrics

Experiment
For File
Percent mitochondrial reads
Nonredundant Read Fraction (NRF)
PCR Bottleneck Coefficient (PBC)
Filtered & Deduped Reads
Report
Details
Experiment
4DNEXKMOP6RJ
Bio Rep 1, Tec Rep 1
ATAC-seq on H1-hESC (Tier 1)
File
Read Positions (bed)
4DNFIOWMJCK6
61.15%
0.94
0.94
17.29m
Experiment
4DNEX9J9YFK3
Bio Rep 2, Tec Rep 1
ATAC-seq on H1-hESC (Tier 1)
File
Read Positions (bed)
4DNFIABCLLIK
63.21%
0.93
0.93
16.69m
Experiment
For File
Optimal Peaks
Rescue Ratio
Self Consistency Ratio
Fraction of Reads in Peaks
Report
Details
From Multiple Experiments
4DNESLMCRW2C
Multiple Experiments
File
Peaks (bigbed)
4DNFIPGM38K4
234.09k
1.0
1.02
0.4