ExperimentSetReplicate

ExperimentSet4DNESLOL2OR2
released
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Replicates of in situ Dnase Hi-C on WTC11 human induced pluripotent stem cells

   November 18th, 2018 at 6:54pm
Source Publication
Dynamics of genome reorganization during human cardiogenesis reveal an RBM20-dependent splicing factory.
Bertero A, Fields PA, et al., Nature communications 2019

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
induced pluripotent stem cells
Sample 
WTC-11 (Tier 1)
Experiment Type(s) 
DNase Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: DNaseI

7 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESLOL2OR2
Multiple Experiments
File
Contact List-combined (pairs)
4DNFI7AUHYTY
200.07m
35.888%
43.576%
20.536%
Experiment
4DNEXBMMAFHR
Bio Rep 1, Tec Rep 1
DNase Hi-C on WTC-11 (Tier 1) with DNaseI
File
Contact List-replicate (pairs)
4DNFIQ5XCHDB
76.84m
40.779%
34.544%
24.677%
Experiment
4DNEX6WMRN9E
Bio Rep 2, Tec Rep 1
DNase Hi-C on WTC-11 (Tier 1) with DNaseI
File
Contact List-replicate (pairs)
4DNFI564GRBR
123.23m
32.838%
49.208%
17.954%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESLOL2OR2
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIH7K4E3C
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXBMMAFHR
Bio Rep 1, Tec Rep 1
DNase Hi-C on WTC-11 (Tier 1) with DNaseI
File
Alignments (bam)
4DNFI2MWES59
137.58m
23.389%
12.745%
5.224%
2.793%
0.107%
Experiment
4DNEX6WMRN9E
Bio Rep 2, Tec Rep 1
DNase Hi-C on WTC-11 (Tier 1) with DNaseI
File
Alignments (bam)
4DNFISDMNA6M
197.88m
13.363%
11.911%
8.587%
3.866%
0.068%