ExperimentSetReplicate

ExperimentSet4DNESLPMUA38
released
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HiC experiment done on DLD1.

   October 4th, 2018 at 7:42pm

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
DLD1
Experiment Type(s) 
Dilution Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: HindIII

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESLPMUA38
Multiple Experiments
File
Contact List-combined (pairs)
4DNFI93VQW93
263.01m
49.189%
33.407%
17.404%
Experiment
4DNEXFZVPJFJ
Bio Rep 2, Tec Rep 1
Dilution Hi-C on DLD1 with HindIII
File
Contact List-replicate (pairs)
4DNFINMUWU5V
157.36m
53.12%
28.711%
18.169%
Experiment
4DNEXK4U6JUT
Bio Rep 1, Tec Rep 1
Dilution Hi-C on DLD1 with HindIII
File
Contact List-replicate (pairs)
4DNFI6I5F4FD
105.65m
43.335%
40.4%
16.265%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESLPMUA38
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIX83GGPU
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXFZVPJFJ
Bio Rep 2, Tec Rep 1
Dilution Hi-C on DLD1 with HindIII
File
Alignments (bam)
4DNFIWV4JWFU
240.46m
18.325%
12.897%
3.339%
0.001%
0.063%
Experiment
4DNEXK4U6JUT
Bio Rep 1, Tec Rep 1
Dilution Hi-C on DLD1 with HindIII
File
Alignments (bam)
4DNFIPJQERQI
163.73m
20.22%
13.586%
1.661%
0.001%
0.075%