ExperimentSetReplicate

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ExperimentSet4DNESMBEGGDJ
released
View JSON

DNA Paint on HFF Htert cells with 3 loci

   August 3rd, 2018 at 2:16pm
Source Publication
Extensive Heterogeneity and Intrinsic Variation in Spatial Genome Organization.
Finn EH, Pegoraro G, et al., Cell 2019

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
HFF-hTERT
Experiment Type(s) 
DNA FISH
Modification Type 
None
Treatment Type 
None
Assay Details 
Target: Chromosomes, GRCh38:4:152319856-152499280 region, GRCh38:4:151542617-151679223 region, GRCh38:4:153567330-153719454 region
Channel
Path
 
ch00
Chromosomes targeted by DAPI
ch01
GRCh38:4:152319856-152499280 region targeted by Alexa Fluor 568-labeled BAC
ch02
GRCh38:4:151542617-151679223 region targeted by Alexa Fluor 488-labeled BAC
ch03
GRCh38:4:153567330-153719454 region targeted by Cy5-labeled BAC

4 Processed Files

Experiment
File
File Type
File Size
From Multiple Experiments
4DNESMBEGGDJ
Multiple Experiments
File
4DNFID78GRES
locus distances, submitter format (txt)
26.34 kB
Experiment
4DNEXO3UY1C6
Bio Rep 1, Tec Rep 1
DNA FISH on HFF-hTERT
File
4DNFIC7T7JUP
loci distances (txt)
41.27 kB
Experiment
4DNEX5N99KTN
Bio Rep 1, Tec Rep 2
DNA FISH on HFF-hTERT
File
4DNFIXEFD2WL
loci distances (txt)
53.24 kB
Experiment
4DNEXMC9VB2I
Bio Rep 1, Tec Rep 3
DNA FISH on HFF-hTERT
File
4DNFIFKEGPWH
loci distances (txt)
46.64 kB