ExperimentSetReplicate

ExperimentSet4DNESMDL47AN
released
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Replicates of RNA-seq on wild-type Patski cells with 4uM 5-aza treatment

   February 6th, 2018 at 9:57pm
Source Publication
Orientation-dependent Dxz4 contacts shape the 3D structure of the inactive X chromosome.
Bonora G, Deng X, et al., Nature communications 2018

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
immortalized cells
Sample 
Patski
Experiment Type(s) 
RNA-seq
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
None

8 Processed Files

Quality Metrics

Experiment
For File
Total mapped reads (genome)
Total uniquely mapped reads (genome)
Details
Experiment
4DNEXZQAZPNZ
Bio Rep 1, Tec Rep 1
RNA-seq on Patski
File
Read Positions (bam)
4DNFIHE8Q4OD
136.04m
116.03m
Experiment
4DNEXG6LTVLI
Bio Rep 2, Tec Rep 1
RNA-seq on Patski
File
Read Positions (bam)
4DNFIR78384Z
129.3m
110.99m
Experiment
For File
Reads mapped to protein-coding genes
Reads mapped to rRNA
Details
Experiment
4DNEXZQAZPNZ
Bio Rep 1, Tec Rep 1
RNA-seq on Patski
File
Gene Expression (tsv)
4DNFIY71LNY6
104.71m
70.57k
Experiment
4DNEXG6LTVLI
Bio Rep 2, Tec Rep 1
RNA-seq on Patski
File
Gene Expression (tsv)
4DNFIIDI78P3
99.38m
58.17k