ExperimentSetReplicate

ExperimentSet4DNESME9B7EZ
released
View JSON

DNA Paint on HFF Htert cells with 3 loci

   August 17th, 2018 at 4:41pm
Source Publication
Extensive Heterogeneity and Intrinsic Variation in Spatial Genome Organization.
Finn EH, Pegoraro G, et al., Cell 2019

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
HFF-hTERT
Experiment Type(s) 
DNA FISH
Modification Type 
None
Treatment Type 
None
Assay Details 
Target: Chromosomes, GRCh38:1:248125293-248263553 region, GRCh38:1:109469002-109662490 region, GRCh38:1:12708719-12865743 region
Channel
Path
 
ch00
Chromosomes targeted by DAPI
ch01
GRCh38:1:248125293-248263553 region targeted by Cy5-labeled BAC
ch02
GRCh38:1:109469002-109662490 region targeted by Alexa Fluor 568-labeled BAC
ch03
GRCh38:1:12708719-12865743 region targeted by Alexa Fluor 488-labeled BAC

7 Processed Files

Experiment
File
File Type
File Size
From Multiple Experiments
4DNESME9B7EZ
Multiple Experiments
File
4DNFID78GRES
locus distances, submitter format (txt)
26.34 kB
Experiment
4DNEXUDCTGNJ
Bio Rep 1, Tec Rep 4
DNA FISH on HFF-hTERT
File
4DNFIJ9LF4YF
loci distances (txt)
58.59 kB
Experiment
4DNEXWBO3EHP
Bio Rep 1, Tec Rep 5
DNA FISH on HFF-hTERT
File
4DNFIEUJMPU4
loci distances (txt)
81.08 kB
Experiment
4DNEX7H7UOCD
Bio Rep 1, Tec Rep 6
DNA FISH on HFF-hTERT
File
4DNFI7EFWB3W
loci distances (txt)
109.98 kB
Experiment
4DNEXF6CATFU
Bio Rep 1, Tec Rep 1
DNA FISH on HFF-hTERT
File
4DNFI643JH6F
loci distances (txt)
92.1 kB
Experiment
4DNEXSL1SR9W
Bio Rep 1, Tec Rep 2
DNA FISH on HFF-hTERT
File
4DNFI12JO4UQ
loci distances (txt)
129.28 kB
Experiment
4DNEXYBRZ9OR
Bio Rep 1, Tec Rep 3
DNA FISH on HFF-hTERT
File
4DNFIK5DJO6I
loci distances (txt)
158.78 kB