ExperimentSetReplicate

ExperimentSet4DNESNHN919R
released
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HiC experiment done on LNCaP clone FGC

   May 5th, 2017 at 6:44pm

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
LNCaP clone FGC
Experiment Type(s) 
Dilution Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: HindIII

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESNHN919R
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIBC4JJSB
195.61m
14.947%
26.744%
58.31%
Experiment
4DNEXAQPT9EH
Bio Rep 1, Tec Rep 1
Dilution Hi-C on LNCaP clone FGC with HindIII
File
Contact List-replicate (pairs)
4DNFISPRKYIO
110.32m
14.516%
30.138%
55.346%
Experiment
4DNEXHMUQC5C
Bio Rep 2, Tec Rep 1
Dilution Hi-C on LNCaP clone FGC with HindIII
File
Contact List-replicate (pairs)
4DNFI197IG9Y
85.29m
15.504%
22.353%
62.143%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESNHN919R
Multiple Experiments
File
Contact Matrix (mcool)
4DNFILC1IPOE
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXAQPT9EH
Bio Rep 1, Tec Rep 1
Dilution Hi-C on LNCaP clone FGC with HindIII
File
Alignments (bam)
4DNFI27BD7Z9
171.25m
15.283%
17.039%
3.259%
0.002%
0.418%
Experiment
4DNEXHMUQC5C
Bio Rep 2, Tec Rep 1
Dilution Hi-C on LNCaP clone FGC with HindIII
File
Alignments (bam)
4DNFI3DTOIAY
135.24m
17.691%
15.788%
3.451%
0.002%
0.468%