ExperimentSetReplicate

ExperimentSet4DNESNL8A9AL
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RNA FISH of Prdx2 and Slc4a1 intronic regions on 24h differentiated cells

   September 14th, 2018 at 4:59pm
Source Publication
Transcriptional Burst Initiation and Polymerase Pause Release Are Key Control Points of Transcriptional Regulation.
Bartman CR, Hamagami N, et al., Molecular cell 2018

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
stem cells
Sample 
G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
Experiment Type(s) 
RNA FISH
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Target: Chromosomes, GRCm38:8:84969622-84974811 mouse region, GRCm38:11:102348820-102365281 mouse region
Channel
Path
 
ch00
Chromosomes targeted by DAPI
ch01
GRCm38:8:84969622-84974811 mouse region targeted by Cy5-labeled custom oligos
ch02
GRCm38:11:102348820-102365281 mouse region targeted by Cy3-labeled custom oligos

12 Processed Files

Experiment
File
File Type
File Size
Experiment
4DNEXZL6AZBC
Bio Rep 1, Tec Rep 1
RNA FISH on G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
File
4DNFIRL4BMP2
csv
22.44 kB
File
4DNFIXQ36J9M
coordinates (csv)
5.31 kB
File
4DNFIHYFXXQ5
csv
22.74 kB
File
4DNFIMPPKXIS
coordinates (csv)
6.73 kB
Experiment
4DNEXAQ7D3GV
Bio Rep 2, Tec Rep 1
RNA FISH on G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
File
4DNFIEBVN4XJ
csv
31.01 kB
File
4DNFIHT2XGPO
coordinates (csv)
8.32 kB
File
4DNFIH6CB61O
csv
37.08 kB
File
4DNFIBK97122
coordinates (csv)
11.3 kB
Experiment
4DNEXV64FZ1R
Bio Rep 3, Tec Rep 1
RNA FISH on G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
File
4DNFIY5B6WXI
csv
29.75 kB
File
4DNFIFUFZ3NR
coordinates (csv)
7.98 kB
File
4DNFIJ4UQZDH
csv
42.3 kB
File
4DNFILJ6K5E4
coordinates (csv)
12.8 kB