ExperimentSetReplicate

ExperimentSet4DNESO6K3XZQ
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DNA Paint on HFF Htert cells with 3 loci

   August 17th, 2018 at 4:41pm
Source Publication
Extensive Heterogeneity and Intrinsic Variation in Spatial Genome Organization.
Finn EH, Pegoraro G, et al., Cell 2019

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
HFF-hTERT
Experiment Type(s) 
DNA FISH
Modification Type 
None
Treatment Type 
None
Assay Details 
Target: Chromosomes, GRCh38:1:107482705-107645471 region, GRCh38:1:22223362-22394657 region, GRCh38:1:12708719-12865743 region
Channel
Path
 
ch00
Chromosomes targeted by DAPI
ch01
GRCh38:1:107482705-107645471 region targeted by Cy5-labeled BAC
ch02
GRCh38:1:22223362-22394657 region targeted by Alexa Fluor 568-labeled BAC
ch03
GRCh38:1:12708719-12865743 region targeted by Alexa Fluor 488-labeled BAC

7 Processed Files

Experiment
File
File Type
File Size
From Multiple Experiments
4DNESO6K3XZQ
Multiple Experiments
File
4DNFID78GRES
locus distances, submitter format (txt)
26.34 kB
Experiment
4DNEXY5EWN2N
Bio Rep 1, Tec Rep 4
DNA FISH on HFF-hTERT
File
4DNFII1HSVKP
loci distances (txt)
141.87 kB
Experiment
4DNEXA5PNELW
Bio Rep 1, Tec Rep 5
DNA FISH on HFF-hTERT
File
4DNFIHLC4RN9
loci distances (txt)
108.62 kB
Experiment
4DNEXBX323PV
Bio Rep 1, Tec Rep 6
DNA FISH on HFF-hTERT
File
4DNFITPF5Q8T
loci distances (txt)
98.78 kB
Experiment
4DNEX1DPRUDC
Bio Rep 1, Tec Rep 1
DNA FISH on HFF-hTERT
File
4DNFIPCV8F4Z
loci distances (txt)
198 kB
Experiment
4DNEXW37ZM8K
Bio Rep 1, Tec Rep 2
DNA FISH on HFF-hTERT
File
4DNFI1U6EIXB
loci distances (txt)
189.58 kB
Experiment
4DNEXNLSPYMR
Bio Rep 1, Tec Rep 3
DNA FISH on HFF-hTERT
File
4DNFIIA8FLK5
loci distances (txt)
137.52 kB