ExperimentSetReplicate

ExperimentSet4DNESO847H8Z
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RNA FISH of Slc25a37 intronic and exonic regions in e1-deleted G1-ER4 cells from Jian Xu lab differentiated for 24 hours

   September 14th, 2018 at 4:58pm
Source Publication
Transcriptional Burst Initiation and Polymerase Pause Release Are Key Control Points of Transcriptional Regulation.
Bartman CR, Hamagami N, et al., Molecular cell 2018

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
stem cells
Sample 
G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion, Crispr deletion of Slc25a37 enhancer E1
Experiment Type(s) 
RNA FISH
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Target: Chromosomes, GRCm38:14:69241851-69285103 mouse region
Channel
Path
 
ch00
Chromosomes targeted by DAPI
ch01
GRCm38:14:69241851-69285103 mouse region targeted by Cy5-labeled custom oligos
ch02
GRCm38:14:69241851-69285103 mouse region targeted by Cy3-labeled custom oligos

9 Processed Files

Experiment
File
File Type
File Size
Experiment
4DNEX2W7MCLI
Bio Rep 1, Tec Rep 1
RNA FISH on G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion, Crispr deletion of Slc25a37 enhancer E1
File
4DNFI93NEJFR
csv
1.53 kB
File
4DNFIT47ZT3A
csv
19.95 kB
File
4DNFI6NNURTF
coordinates (csv)
5.21 kB
Experiment
4DNEXGPARLHP
Bio Rep 2, Tec Rep 1
RNA FISH on G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion, Crispr deletion of Slc25a37 enhancer E1
File
4DNFI8C52UZ7
csv
1.27 kB
File
4DNFIRLY1FLW
csv
13.63 kB
File
4DNFIYEY32IQ
coordinates (csv)
3.82 kB
Experiment
4DNEXG3319S1
Bio Rep 3, Tec Rep 1
RNA FISH on G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion, Crispr deletion of Slc25a37 enhancer E1
File
4DNFIHWT1V1O
csv
1.7 kB
File
4DNFI7NNXUSP
csv
16.28 kB
File
4DNFIP9HRMAS
coordinates (csv)
4.11 kB