ExperimentSetReplicate

ExperimentSet4DNESOHWXJQY
released
View JSON

Replicates of dilution Hi-C on GM19141

   March 29th, 2019 at 10:51pm
Source Publication
Common DNA sequence variation influences 3-dimensional conformation of the human genome.
Gorkin DU, Qiu Y, et al., Genome biology 2019

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
GM19141
Experiment Type(s) 
Dilution Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: HindIII

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESOHWXJQY
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIW146QBK
357.86m
43.759%
27.005%
29.236%
Experiment
4DNEX2TH7TT7
Bio Rep 1, Tec Rep 1
Dilution Hi-C on GM19141 with HindIII
File
Contact List-replicate (pairs)
4DNFIYE9O3PU
127.9m
42.806%
28.397%
28.796%
Experiment
4DNEXSAUBE1B
Bio Rep 2, Tec Rep 1
Dilution Hi-C on GM19141 with HindIII
File
Contact List-replicate (pairs)
4DNFIT3PDTRP
229.96m
44.288%
26.231%
29.481%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESOHWXJQY
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIKMV9ZC7
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEX2TH7TT7
Bio Rep 1, Tec Rep 1
Dilution Hi-C on GM19141 with HindIII
File
Alignments (bam)
4DNFIVRWUL4G
208.58m
15.743%
8.911%
9.988%
4.039%
0.336%
Experiment
4DNEXSAUBE1B
Bio Rep 2, Tec Rep 1
Dilution Hi-C on GM19141 with HindIII
File
Alignments (bam)
4DNFIY7CBLEI
354.71m
10.842%
7.337%
10.625%
6.366%
0.338%