ExperimentSetReplicate

ExperimentSet4DNESP6YR975
released
View JSON

DNA Paint on HFF Htert cells with 3 loci

   August 13th, 2018 at 4:06pm
Source Publication
Extensive Heterogeneity and Intrinsic Variation in Spatial Genome Organization.
Finn EH, Pegoraro G, et al., Cell 2019

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
HFF-hTERT
Experiment Type(s) 
DNA FISH
Modification Type 
None
Treatment Type 
None
Assay Details 
Target: Chromosomes, GRCh38:1:22000499-22169683 region, GRCh38:1:18566409-18766880 region, GRCh38:1:12708719-12865743 region
Channel
Path
 
ch00
Chromosomes targeted by DAPI
ch01
GRCh38:1:22000499-22169683 region targeted by Cy5-labeled BAC
ch02
GRCh38:1:18566409-18766880 region targeted by Alexa Fluor 568-labeled BAC
ch03
GRCh38:1:12708719-12865743 region targeted by Alexa Fluor 488-labeled BAC

4 Processed Files

Experiment
File
File Type
File Size
From Multiple Experiments
4DNESP6YR975
Multiple Experiments
File
4DNFID78GRES
locus distances, submitter format (txt)
26.34 kB
Experiment
4DNEXY3YJPJ6
Bio Rep 1, Tec Rep 4
DNA FISH on HFF-hTERT
File
4DNFIJDQURDM
loci distances (txt)
54.35 kB
Experiment
4DNEXT9FIPJC
Bio Rep 1, Tec Rep 5
DNA FISH on HFF-hTERT
File
4DNFICL967PR
loci distances (txt)
69.99 kB
Experiment
4DNEXIETXBMP
Bio Rep 1, Tec Rep 6
DNA FISH on HFF-hTERT
File
4DNFI7V73OUF
loci distances (txt)
65.49 kB
Experiment
File
File Type
File Size
Experiment
4DNEX785QYHL
Bio Rep 1, Tec Rep 4
DNA FISH on HFF-hTERT
-
-
-
Experiment
4DNEXXMNS9RU
Bio Rep 1, Tec Rep 5
DNA FISH on HFF-hTERT
-
-
-
Experiment
4DNEXY6DD25U
Bio Rep 1, Tec Rep 6
DNA FISH on HFF-hTERT
-
-
-