ExperimentSetReplicate

ExperimentSet4DNESPE5LZ1C
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RNA FISH of Cdc34 and Slc4a1 intronic regions in G1E-ER4 cells differentiated for 24 hours treated for 60min with 250nM JQ1

   September 14th, 2018 at 4:59pm
Source Publication
Transcriptional Burst Initiation and Polymerase Pause Release Are Key Control Points of Transcriptional Regulation.
Bartman CR, Hamagami N, et al., Molecular cell 2018

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
stem cells
Sample 
G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
Experiment Type(s) 
RNA FISH
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Target: Chromosomes, GRCm38:10:79682195-79688398 mouse region, GRCm38:11:102348820-102365281 mouse region
Channel
Path
 
ch00
Chromosomes targeted by DAPI
ch01
GRCm38:10:79682195-79688398 mouse region targeted by Cy5-labeled custom oligos
ch02
GRCm38:11:102348820-102365281 mouse region targeted by Cy3-labeled custom oligos

12 Processed Files

Experiment
File
File Type
File Size
Experiment
4DNEXS957CP2
Bio Rep 1, Tec Rep 1
RNA FISH on G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
File
4DNFI31OHRVI
csv
17.08 kB
File
4DNFI26STHFA
coordinates (csv)
4.22 kB
File
4DNFI4X55324
csv
21.45 kB
File
4DNFIFAZC2LJ
coordinates (csv)
5.32 kB
Experiment
4DNEX6ABDTSN
Bio Rep 2, Tec Rep 1
RNA FISH on G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
File
4DNFIQSVASH4
csv
24.62 kB
File
4DNFICY5URJG
coordinates (csv)
6.39 kB
File
4DNFIV5SBVXX
csv
14.32 kB
File
4DNFIEQP63L5
coordinates (csv)
2.39 kB
Experiment
4DNEXLVYBW88
Bio Rep 3, Tec Rep 1
RNA FISH on G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
File
4DNFIS5CE7FQ
csv
22.94 kB
File
4DNFI6T7F4GU
coordinates (csv)
6.39 kB
File
4DNFISNGI6JP
csv
16.45 kB
File
4DNFI94FV517
coordinates (csv)
3.73 kB