ExperimentSetReplicate

ExperimentSet4DNESPM6PKEH
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RNA FISH of Tcf3 and Tal1 intronic regions in G1E-ER4 cells differentiated for 24 hours treated for 60min with 250nM JQ1

   September 14th, 2018 at 4:59pm
Source Publication
Transcriptional Burst Initiation and Polymerase Pause Release Are Key Control Points of Transcriptional Regulation.
Bartman CR, Hamagami N, et al., Molecular cell 2018

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
stem cells
Sample 
G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
Experiment Type(s) 
RNA FISH
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Target: Chromosomes, GRCm38:10:80409165-80433653 mouse region, GRCm38:4:115056426-115071755 mouse region
Sample Image 
tal1 probe with DAPI, +JQ1 treatment
View Image Item
Channel
Path
 
ch00
Chromosomes targeted by DAPI
ch01
GRCm38:10:80409165-80433653 mouse region targeted by Alexa Fluor 594-labeled custom oligos
ch02
GRCm38:4:115056426-115071755 mouse region targeted by Cy5-labeled custom oligos

12 Processed Files

Experiment
File
File Type
File Size
Experiment
4DNEX77ZGU13
Bio Rep 1, Tec Rep 1
RNA FISH on G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
File
4DNFIF6MJ7EQ
csv
12.36 kB
File
4DNFILGVJGZQ
coordinates (csv)
1.24 kB
File
4DNFIGWALO9D
csv
19.86 kB
File
4DNFIRA291VD
coordinates (csv)
3.94 kB
Experiment
4DNEXDHHTZBE
Bio Rep 2, Tec Rep 1
RNA FISH on G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
File
4DNFIBQVGY9X
csv
18.77 kB
File
4DNFIABTA3MJ
coordinates (csv)
2.84 kB
File
4DNFIEUMO7HT
csv
30.53 kB
File
4DNFIZN44UYC
coordinates (csv)
5.94 kB
Experiment
4DNEX7BKGHEP
Bio Rep 3, Tec Rep 1
RNA FISH on G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
File
4DNFIVF6Z9BJ
csv
18.31 kB
File
4DNFII8PXEV9
coordinates (csv)
2.82 kB
File
4DNFIXNQSULB
csv
25.42 kB
File
4DNFI1F71FP4
coordinates (csv)
4.63 kB