ExperimentSetReplicate

ExperimentSet4DNESPOC41XG
released
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in situ Hi-C on heat treated K562 cells with MboI

   October 11th, 2018 at 8:56pm
Source Publication
Chromatin conformation remains stable upon extensive transcriptional changes driven by heat shock.
Ray J, Munn PR, et al., Proceedings of the National Academy of Sciences of the United States of America 2019

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
K562 (Tier 2)
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
Heat Shock
Assay Details 
Enzyme: MboI

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESPOC41XG
Multiple Experiments
File
Contact List-combined (pairs)
4DNFI82JWZX8
109.12m
56.351%
21.31%
22.339%
Experiment
4DNEX9G7BP85
Bio Rep 1, Tec Rep 1
in situ Hi-C on K562 (Tier 2) with MboI
File
Contact List-replicate (pairs)
4DNFIJOJ3OLJ
45.7m
62.151%
14.651%
23.199%
Experiment
4DNEXUH6AEZJ
Bio Rep 2, Tec Rep 1
in situ Hi-C on K562 (Tier 2) with MboI
File
Contact List-replicate (pairs)
4DNFITG7ZWQL
63.42m
52.173%
26.108%
21.719%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESPOC41XG
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIA39FH27
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEX9G7BP85
Bio Rep 1, Tec Rep 1
in situ Hi-C on K562 (Tier 2) with MboI
File
Alignments (bam)
4DNFI67OTBBX
86.29m
19.58%
26.155%
1.308%
0.0%
0.347%
Experiment
4DNEXUH6AEZJ
Bio Rep 2, Tec Rep 1
in situ Hi-C on K562 (Tier 2) with MboI
File
Alignments (bam)
4DNFI8Q66Q61
127.09m
23.104%
26.161%
0.834%
0.0%
0.477%