ExperimentSetReplicate

ExperimentSet4DNESPXW2DOY
released

ATAC-seq on HEK293 cells - Cas9-AluGG mgRNA - 3 h

   February 14th, 2022 at 3:09am

Experiment Set Properties  


Set Type 
Replicate
Organism 
Sample Type 
immortalized cells
Experiment Type(s) 
Modification Type 
None
Treatment Type 
None
Assay Details 
None

5 Processed Files

Quality Metrics

Experiment
For File
Percent mitochondrial reads
Nonredundant Read Fraction (NRF)
PCR Bottleneck Coefficient (PBC)
Filtered & Deduped Reads
Details
Experiment
4DNEXPIDUJP5
Bio Rep 1, Tec Rep 1
ATAC-seq on HEK293 (Tier 2)
File
Read Positions (bed)
4DNFIOXLL6CN
2.84%
0.9
0.92
76.94m
Experiment
4DNEX41BMVGG
Bio Rep 2, Tec Rep 1
ATAC-seq on HEK293 (Tier 2)
File
Read Positions (bed)
4DNFILGBEZ8L
6.28%
0.92
0.93
55.7m
Experiment
For File
Optimal Peaks
Rescue Ratio
Self Consistency Ratio
Fraction of Reads in Peaks
Details
From Multiple Experiments
4DNESPXW2DOY
Multiple Experiments
File
Peaks (bigbed)
4DNFILGWK8MV
236.36k
1.02
1.1
0.36