ExperimentSetReplicate

ExperimentSet4DNESQ6BMLTI
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DNA Paint on HFF Htert cells with 3 loci

   August 17th, 2018 at 4:41pm
Source Publication
Extensive Heterogeneity and Intrinsic Variation in Spatial Genome Organization.
Finn EH, Pegoraro G, et al., Cell 2019

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
HFF-hTERT
Experiment Type(s) 
DNA FISH
Modification Type 
None
Treatment Type 
None
Assay Details 
Target: Chromosomes, GRCh38:1:61560943-61746906 region, GRCh38:1:2370451-2570719 region, GRCh38:1:12708719-12865743 region
Channel
Path
 
ch00
Chromosomes targeted by DAPI
ch01
GRCh38:1:61560943-61746906 region targeted by Cy5-labeled BAC
ch02
GRCh38:1:2370451-2570719 region targeted by Alexa Fluor 568-labeled BAC
ch03
GRCh38:1:12708719-12865743 region targeted by Alexa Fluor 488-labeled BAC

7 Processed Files

Experiment
File
File Type
File Size
From Multiple Experiments
4DNESQ6BMLTI
Multiple Experiments
File
4DNFID78GRES
locus distances, submitter format (txt)
26.34 kB
Experiment
4DNEXPI4ZOUT
Bio Rep 1, Tec Rep 4
DNA FISH on HFF-hTERT
File
4DNFIENRBRFZ
loci distances (txt)
76.44 kB
Experiment
4DNEXJFDRAWM
Bio Rep 1, Tec Rep 5
DNA FISH on HFF-hTERT
File
4DNFIF5YPBWV
loci distances (txt)
88.86 kB
Experiment
4DNEXPZ7AOGG
Bio Rep 1, Tec Rep 6
DNA FISH on HFF-hTERT
File
4DNFI2IPJTFY
loci distances (txt)
74.58 kB
Experiment
4DNEXKP9VJ4A
Bio Rep 1, Tec Rep 1
DNA FISH on HFF-hTERT
File
4DNFIF4J2DY7
loci distances (txt)
91.53 kB
Experiment
4DNEXBYSKUUZ
Bio Rep 1, Tec Rep 2
DNA FISH on HFF-hTERT
File
4DNFID1JNLV9
loci distances (txt)
94.17 kB
Experiment
4DNEXYDMXBRR
Bio Rep 1, Tec Rep 3
DNA FISH on HFF-hTERT
File
4DNFIDFDTZWJ
loci distances (txt)
97.01 kB