ExperimentSetReplicate

ExperimentSet4DNESQK7WJLT
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Replicates of dilution Hi-C on GM19099

   March 29th, 2019 at 10:51pm
Source Publication
Common DNA sequence variation influences 3-dimensional conformation of the human genome.
Gorkin DU, Qiu Y, et al., Genome biology 2019

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
GM19099
Experiment Type(s) 
Dilution Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: HindIII

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESQK7WJLT
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIWEPYVEC
539.8m
42.444%
21.443%
36.113%
Experiment
4DNEXS7USB6L
Bio Rep 1, Tec Rep 1
Dilution Hi-C on GM19099 with HindIII
File
Contact List-replicate (pairs)
4DNFID7PRMX4
279.46m
44.756%
23.65%
31.593%
Experiment
4DNEXTNMDOUU
Bio Rep 2, Tec Rep 1
Dilution Hi-C on GM19099 with HindIII
File
Contact List-replicate (pairs)
4DNFI7UV27Y4
260.34m
39.963%
19.073%
40.965%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESQK7WJLT
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIKAC7MSF
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXS7USB6L
Bio Rep 1, Tec Rep 1
Dilution Hi-C on GM19099 with HindIII
File
Alignments (bam)
4DNFIXFLD6CW
430.82m
10.385%
8.948%
11.494%
4.308%
0.295%
Experiment
4DNEXTNMDOUU
Bio Rep 2, Tec Rep 1
Dilution Hi-C on GM19099 with HindIII
File
Alignments (bam)
4DNFI23WN2PB
405.2m
10.79%
9.024%
11.432%
4.503%
0.252%