ExperimentSetReplicate

ExperimentSet4DNESQXAEPXP
released
View JSON

Replicates of dilution Hi-C on GM18507

   March 29th, 2019 at 10:51pm
Source Publication
Common DNA sequence variation influences 3-dimensional conformation of the human genome.
Gorkin DU, Qiu Y, et al., Genome biology 2019

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
GM18507
Experiment Type(s) 
Dilution Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: HindIII

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESQXAEPXP
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIAXV4BH5
447.26m
38.334%
27.487%
34.178%
Experiment
4DNEXQE76BS6
Bio Rep 1, Tec Rep 1
Dilution Hi-C on GM18507 with HindIII
File
Contact List-replicate (pairs)
4DNFIUXL6BA6
238.04m
32.204%
29.683%
38.112%
Experiment
4DNEXYZP675H
Bio Rep 2, Tec Rep 1
Dilution Hi-C on GM18507 with HindIII
File
Contact List-replicate (pairs)
4DNFI7CY1YJ9
209.22m
45.308%
24.989%
29.703%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESQXAEPXP
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIEYSPGU1
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXQE76BS6
Bio Rep 1, Tec Rep 1
Dilution Hi-C on GM18507 with HindIII
File
Alignments (bam)
4DNFIGFKZWQG
407.27m
16.922%
8.248%
12.757%
3.627%
0.323%
Experiment
4DNEXYZP675H
Bio Rep 2, Tec Rep 1
Dilution Hi-C on GM18507 with HindIII
File
Alignments (bam)
4DNFIRER74WQ
320.01m
10.86%
7.716%
10.824%
5.221%
0.353%